PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00549.1_g00012.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 412aa MW: 44908.6 Da PI: 4.7126

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00549.1_g00012.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.7e-06	360	382	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f + C+ G++C F H+ Rsa1.0_00549.1_g00012.1 360 KPCMYFNSSRGCRNGANCLFQHD 382 69********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.995	356	384	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	360	383	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	361	387	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH LQAKSHPSED NLPPGFGGPL 60 SANEPQIKLS DIPVIKWICS VRIVLDEEWR VVAGEESKEV ETQNQRELRV LEAFYPGASA 120 IPPNPSVLAD VDNSDYDDQQ TVVIPILPVE DDDIDPASDL PVQSGVDVVG TEPSRSDENT 180 SVSSTLPAAS EIMAALTAIS NNKELGSGMI DQELLMKILS NPKLVENLVA NSSGAGSVSS 240 NAGSLYLSST HEANGVTTST PASSNGQYYP QPTPSLVYPP PTSSDQPNYG APPARDASYY 300 KSLIQQHGGE RQEAPPPVQQ HLGYRYNNPQ PGGGLNPEMV NSNNNNNQRP PRDSKQKIMK 360 PCMYFNSSRG CRNGANCLFQ HDATAYQPRN PNNGNTNNPE MQTAKRMRFD RD

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH LQAKSHPSED NLPPGFGGPL  60
SANEPQIKLS DIPVIKWICS VRIVLDEEWR VVAGEESKEV ETQNQRELRV LEAFYPGASA  120
IPPNPSVLAD VDNSDYDDQQ TVVIPILPVE DDDIDPASDL PVQSGVDVVG TEPSRSDENT  180
SVSSTLPAAS EIMAALTAIS NNKELGSGMI DQELLMKILS NPKLVENLVA NSSGAGSVSS  240
NAGSLYLSST HEANGVTTST PASSNGQYYP QPTPSLVYPP PTSSDQPNYG APPARDASYY  300
KSLIQQHGGE RQEAPPPVQQ HLGYRYNNPQ PGGGLNPEMV NSNNNNNQRP PRDSKQKIMK  360
PCMYFNSSRG CRNGANCLFQ HDATAYQPRN PNNGNTNNPE MQTAKRMRFD RD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189405	0.0	AC189405.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058M10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009110254.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6-like
Swissprot	Q56XU4	0.0	C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A078JCT6	0.0	A0A078JCT6_BRANA; BnaA08g31260D protein
STRING	Bra016491.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5614	14	18